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Bika Open Source LIMS in the Philipines
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GSoC 2018 Bika LIMS Ideas
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User Manual
Table of Contents
Recent Updates
Disclaimer
Bika Health II
Patient Module Configuration
Patient Registration
Antibiotics
Microorganisms
AST
Panic level alerts
Diseases, Signs and Symptoms
Sample Registration
1 Introduction
1.1.1 User preferences and passwords
1.1.2 LIMS page lay-out
1.1.3 Bika Browser convention
1.1.4 Folder structure
1.1.5 Workflow in four steps
1.1.6 Dashboard
1.2.1 Display preferences
1.2.2 Tables
1.2.3 Icons
1.2.4 Search
1.2.5 Bika Barcode use
1.3 Language Preference
1.4 Brand your LIMS
1.5 Export Objects and lists as CSV
1.6 Technical. Hardware. Server stack
1.6.1 LIMS Version
1.6.2 ERD
1.6.3 Undoing transactions
1.7 Lab Content and Document management
1.6.4 Upgrading Add-on Products
2 Users and Groups
2.1 Lab user groups and their roles
2.2 Authorisation matrix
2.3 Creating Users
2.4 Lab users in the UI
3 Clients
3.1 Client Organisations and their Contacts
3.2 Managing Clients
3.3 Client Contacts and User privileges
3.4 Removing Clients
3.5 Client User Interface
4 Configuration
4.1 Configuration Convention
4.2 Order of Configuration
4.3 Global settings
4.4 ID server
4.5 Samples and Sampling
4.5.1 Sample Point Locations
4.6 Analytical Methods
4.8 Import Bika Setup data
4.9 Setup migration
5 Instruments
5.1 Instrument Configuration
5.2 Instrument Maintenance
5.3 Instrument QC
5.4 Corrective Action
5.5 How To bring an instrument back on line after failing QC
6 Analysis Services
6.1 Description, Analysis
6.2 Measure of Uncertainty
6.3 Results Options
6.4 AS Methods
6.5 Sample attributes
6.6 Advanced
6.7 Results Interpretation Templates
7 Calculations
7 Calculations
7.1 Capturing Calculated results
8 Analysis Templates
Sample Registration Templates
9 Product Specifications
10 QC
10.1 Reference Definitions
10.2 Creating Reference Samples
10.3 Capturing QC results
10.4 QC Failure Workflow
10.5 Control Charts
10.7 Audit trails
10.6 Reference Sample Expiry
11 Workflow
11.1 Sample Registration
11.2 Sampling. Preservation
11.3 Receiving and Labeling Samples
11.3.1 Sample Rejection
11.3.2 Sample Preparation
11.4 Results Capture
11.5 Verifying results
11.6 Results publication. COA
Bika LIMS COAs
11.7 Invalidating erroneously published Results
11.8 Secondary Testing of Samples
11.9 Sample Prioritisation
11.10 Workflow States summary
Sampling Rounds and Surveys
11.3 Recebimento e Rotulagem de Amostras
11.4 Results Capture
12 Batching
12.1 Creating a Sample Batch
12.2 Batch Sample Import
12.2.1 Preparing the CSV
12. 2 Importação de Amostra em Lote
12.2.1 Preparando o CSV
13 Worksheets
13.1 Creating Worksheets
13.2 Add QC Controls
13.3 Results Capture
13.4 Results Verification. Retesting
13.5 Creating Worksheet Templates
13.5 Worksheets from Templates
13.7 Export Worksheets to Instruments
13.8 Instrument Results Import
13.9 Results Spreadsheet Imports
13.1.1 Creating Worksheets from Sample Lists
13.5 Planilhas de Modelos
14 Management Reports
15 Aliquots. Sample Partitioning
16 Storage
15.1 Storage Facilities
15.2 Storing Samples
15.3 Retrieving Samples
17 Billing
Cobrança. Faturas em Lote
Prepaid testing. Invoicing Use Case
Invoice Content
18 Background processing
17. 3 Configuring Queue management
17.4 Using Asynchronous Processing
Issue Tracking
Sign up to the Bika Open Source LIMS Tracker
Log an issue
Technical
Senaite 1 to 2 Configuration Migration as upgrade
Seeding Bika Senaite IDs
Enabling AS keyword modifications
ID Server recommendations
Disable Contact page to thwart spammers
Removing Analyses from Samples
42 Error Messages and Alerts
Instrument messages
Specifications changed
Videos
Bika Senaite LIMS Video. Batch Sample Registration
Bika Senaite LIMS Video. Receiving and Labelling Samples
Bika Senaite LIMS Video. Worksheets
Bika Senaite LIMS Video. Verification and Publication
Bika Instrument Interfacing
Creating and Using Calculations
Creating and using Worksheet Templates
Bulk Sample Import
Bika QC. Reference Definitions and Samples
Spacers. Templates
Recent Bika Senaite Manual updates
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Plone as lab information repository
Use Cases
Use Case. Bulk over-the-counter Samples
Use Case. Wet Samples
Configuring Bika for Fire Assays
Images - Fire Assay use case
Bika Cannabis
Senaite Health
Senaite Health Configuration
Doctors. Care givers
Create, View and Edit Patients
Creating a Clinical Case
Anonymous Patients. Quicker Case and AR creation
Creating Analysis Requests for Anonymous Patients
Sensitivity and Susceptibility Testing
Life Threat Alerts. Panic levels
Regulatory Inspector role
Images ASs
Bacterial Identification
Translate the manual
Images - ERD
Bika Senaite Open Source LIMS ERD - QC
Bika Senaite Open Source LIMS ERD - Setup
Bika Senaite Open Source LIMS ERD - Clients
Bika Senaite Open Source LIMS ERD - Template configuration
Bika Open Source LIMS ERD - Samples Analyses Worksheets
Images - Translating the Manual
Install Google Translate
Pin Google Translate
Translate the LIMS manual
Bika Open Source LIMS page translated
Demos ⋅ Videos
Bika LIMS 3
Bika Health 3
Bika Interlab 2
About Bika - Contact
中国人
特点和优势
Images Chinese
Bika 开源 LIMS 中文流程图
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